Domain Examples
Worked, lintable artifacts showing the Brenner Loop structure applied to biology, computer science, and social science.
Biology: Cell Fate During Development
How do embryonic cells determine their fate?
How do initially similar embryonic cells arrive at stable, distinct fates (e.g., neural vs mesoderm)? We want a mechanism that yields discriminative predictions under interventions (dose, timing, contact), not just a story that fits existing gradients or marker patterns.
Computer Science: LLM Hallucination
Why do LLMs produce confident falsehoods?
Why do LLMs sometimes output fluent but false claims, and which interventions reduce this without killing usefulness? We want hypotheses that separate objective/grounding limits from alignment incentives and from evaluation artifacts.
Social Science: Community Toxicity
Why do some online communities become toxic?
Why do some online communities spiral into harassment and chronic conflict while others remain constructive? We want quasi-experimental tests that discriminate enforcement failure, selection/composition, and platform amplification mechanisms.